Package: alabaster.ranges 1.5.2

Aaron Lun

alabaster.ranges: Load and Save Ranges-related Artifacts from File

Save GenomicRanges, IRanges and related data structures into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Authors:Aaron Lun [aut, cre]

alabaster.ranges_1.5.2.tar.gz
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alabaster.ranges.pdf |alabaster.ranges.html✨
alabaster.ranges/json (API)
NEWS

# Install 'alabaster.ranges' in R:

install.packages('alabaster.ranges', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:alabaster.ranges-1.5.1(bioc 3.20)alabaster.ranges-1.4.1(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

12 exports 2.22 score 25 dependencies 7 dependents

Last updated 19 days agofrom:9483fb6567

Exports:loadAtomicVectorList loadDataFrameList loadGRanges loadGRangesList loadSeqinfo readAtomicVectorList readDataFrameList readGRanges readGRangesList readSeqinfo saveObject stageObject

Dependencies:alabaster.base alabaster.schemas askpass BiocGenerics curl GenomeInfoDb GenomeInfoDbData GenomicRanges httr IRanges jsonlite jsonvalidate mime openssl R6 Rcpp rhdf5 rhdf5filters Rhdf5lib S4Vectors sys UCSC.utils V8 XVector zlibbioc

Saving genomic ranges to artifacts and back again

Aaron Lun

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Jun 23 2024.

Last update: 2023-11-20
Started: 2022-09-20

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Load an atomic vector list	loadAtomicVectorList readAtomicVectorList
Load a data frame list	loadDataFrameList readDataFrameList
Read a GRanges from disk	loadGRanges readGRanges
Read a GRangesList from disk	loadGRangesList readGRangesList
Read a Seqinfo from disk	loadSeqinfo readSeqinfo
Save compressed list of atomic vectors to disk	saveObject,CompressedAtomicList-method stageObject,CompressedAtomicList-method
Save compressed lists of data frames to disk	saveObject,CompressedSplitDataFrameList-method stageObject,CompressedSplitDataFrameList-method
Save a GRanges object to disk	saveObject,GRanges-method stageObject,GRanges-method
Save a GRangesList object to disk	saveObject,GRangesList-method stageObject,GRangesList-method
Save a Seqinfo object to disk	saveObject,Seqinfo-method stageObject,Seqinfo-method