Package: alabaster.matrix 1.7.7
alabaster.matrix: Load and Save Artifacts from File
Save matrices, arrays and similar objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Authors:
alabaster.matrix_1.7.7.tar.gz
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alabaster.matrix_1.7.7.tgz(r-4.4-x86_64)alabaster.matrix_1.7.7.tgz(r-4.4-arm64)alabaster.matrix_1.7.7.tgz(r-4.3-x86_64)alabaster.matrix_1.7.7.tgz(r-4.3-arm64)
alabaster.matrix_1.7.7.tar.gz(r-4.5-noble)alabaster.matrix_1.7.7.tar.gz(r-4.4-noble)
alabaster.matrix_1.7.7.tgz(r-4.4-emscripten)alabaster.matrix_1.7.5.tgz(r-4.3-emscripten)
alabaster.matrix.pdf |alabaster.matrix.html✨
alabaster.matrix/json (API)
NEWS
# Install 'alabaster.matrix' in R: |
install.packages('alabaster.matrix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:alabaster.matrix-1.7.6(bioc 3.21)alabaster.matrix-1.6.1(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
dataimportdatarepresentationcpp
Last updated 4 days agofrom:e3f095f001. Checks:6 OK, 2 NOTE, 1 FAILURE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 13 2025 |
R-4.5-win-x86_64 | NOTE | Feb 13 2025 |
R-4.5-linux-x86_64 | NOTE | Feb 13 2025 |
R-4.4-win-x86_64 | OK | Feb 13 2025 |
R-4.4-mac-x86_64 | OK | Feb 13 2025 |
R-4.4-mac-aarch64 | OK | Feb 13 2025 |
R-4.3-win-x86_64 | OUTDATED | Jan 25 2025 |
R-4.3-mac-x86_64 | OK | Feb 13 2025 |
R-4.3-mac-aarch64 | OK | Feb 13 2025 |
Exports:.createRawArraySeed.extractArrayDimnamesaltReloadDelayedObjectaltReloadDelayedObjectFunctionaltStoreDelayedObjectaltStoreDelayedObjectFunctionAmalgamatedArrayAmalgamatedArraySeedcomponentNamescreateExternalSeedDedupSessionDelayedArrayDelayedMaskextract_arrayextract_sparse_arrayextractComponentsis_sparseloadArrayloadWrapperArraymatrixClasspathpreserveDelayedOperationsreadArrayreadDelayedArrayreadSparseMatrixrecycleHdf5FilesregisterReloadDelayedObjectFunctionreloadDelayedObjectreloadDelayedObjectFunctionRegistryReloadedArrayReloadedArraySeedsaveObjectstageObjectstoreDelayedObjectwriteSparseMatrix
Dependencies:abindalabaster.basealabaster.schemasassortheadBiocGenericscrayoncurlDelayedArraygenericsh5mreadHDF5ArrayIRangesjsonlitejsonvalidatelatticeMatrixMatrixGenericsmatrixStatsR6Rcpprhdf5rhdf5filtersRhdf5libS4ArraysS4VectorsSparseArrayV8XVector
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Amalgamated array class | AmalgamatedArray AmalgamatedArray-class AmalgamatedArraySeed AmalgamatedArraySeed-class AmalgamatedMatrix-class coerce,AmalgamatedArray,AmalgamatedMatrix-method coerce,AmalgamatedMatrix,AmalgamatedArray-method componentNames DelayedArray,AmalgamatedArraySeed-method extractComponents matrixClass,AmalgamatedArray-method stageObject,AmalgamatedArray-method |
Array loading utilities | .createRawArraySeed .extractArrayDimnames createRawArraySeed |
Delayed masking | chunkdim,DelayedMask-method DelayedMask DelayedMask-class dim,DelayedMask-method dimnames,DelayedMask-method extract_array,DelayedMask-method extract_sparse_array,DelayedMask-method is_sparse,DelayedMask-method path,DelayedMask-method |
Preserve delayed operations during staging | preserveDelayedOperations |
Read a dense array from disk | loadArray readArray |
Read a delayed array from disk | readDelayedArray |
Read a sparse matrix from disk | readSparseMatrix |
Recycle existing HDF5 files | recycleHdf5Files |
Reloaded 'alabaster' array | coerce,ReloadedArray,ReloadedMatrix-method coerce,ReloadedMatrix,ReloadedArray-method DelayedArray,ReloadedArraySeed-method matrixClass,ReloadedArray-method path,ReloadedArraySeed-method ReloadedArray ReloadedArray-class ReloadedArraySeed ReloadedArraySeed-class ReloadedMatrix-class saveObject,ReloadedArray-method |
Save a multi-dimensional array to disk | saveArray saveObject,array-method saveObject,denseMatrix-method stageObject,array-method stageObject,Matrix-method |
Save DelayedArrays to disk | saveDelayedArray saveObject,DelayedArray-method stageObject,DelayedArray-method stageObject,DelayedMatrix-method |
Save a sparse matrix to disk | saveObject,sparseMatrix-method saveObject,SVT_SparseMatrix-method saveSparseMatrix |
Store/reload a DelayedArray | altReloadDelayedObject altReloadDelayedObjectFunction altStoreDelayedObject altStoreDelayedObjectFunction createExternalSeedDedupSession registerReloadDelayedObjectFunction reloadDelayedObject reloadDelayedObjectFunctionRegistry storeDelayedObject storeDelayedObject,ANY-method storeDelayedObject,array-method storeDelayedObject,ConstantArraySeed-method storeDelayedObject,DelayedAbind-method storeDelayedObject,DelayedAperm-method storeDelayedObject,DelayedNaryIsoOp-method storeDelayedObject,DelayedSetDimnames-method storeDelayedObject,DelayedSubassign-method storeDelayedObject,DelayedSubset-method storeDelayedObject,DelayedUnaryIsoOpStack-method storeDelayedObject,DelayedUnaryIsoOpWithArgs-method storeDelayedObject,denseMatrix-method storeDelayedObject,sparseMatrix-method storeDelayedObject,SVT_SparseMatrix-method |
DelayedArray wrapper seed | loadWrapperArray WrapperArray WrapperArray-class WrapperArraySeed WrapperArraySeed-class |
Write a sparse matrix | writeSparseMatrix |