Package: UniProt.ws 2.45.0

Marcel Ramos

UniProt.ws: R Interface to UniProt Web Services

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Authors:Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

UniProt.ws_2.45.0.tar.gz
UniProt.ws_2.45.0.zip(r-4.5)UniProt.ws_2.45.0.zip(r-4.4)UniProt.ws_2.45.0.zip(r-4.3)
UniProt.ws_2.45.0.tgz(r-4.4-any)UniProt.ws_2.45.0.tgz(r-4.3-any)
UniProt.ws_2.45.0.tar.gz(r-4.5-noble)UniProt.ws_2.45.0.tar.gz(r-4.4-noble)
UniProt.ws_2.45.0.tgz(r-4.4-emscripten)UniProt.ws_2.45.0.tgz(r-4.3-emscripten)
UniProt.ws.pdf |UniProt.ws.html✨
UniProt.ws/json (API)
NEWS

# Install 'UniProt.ws' in R:

install.packages('UniProt.ws', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/uniprot.ws/issues

On BioConductor:UniProt.ws-2.45.0(bioc 3.20)UniProt.ws-2.44.0(bioc 3.19)

bioconductor-package

18 exports 2.05 score 61 dependencies 3 dependents 10 mentions

Last updated 2 months agofrom:fce5a4edc5

Exports:allFromKeys allToKeys availableUniprotSpecies columns keys keytypes lookupUniprotSpeciesFromTaxId mapUniProt queryUniProt returnFields select species taxId taxId<-taxname2domain taxname2species taxname2taxid UniProt.ws

Dependencies:AnnotationDbi askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr digest dplyr fansi fastmap filelock generics GenomeInfoDb GenomeInfoDbData glue hms httpcache httr IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig plogr png prettyunits progress purrr R6 rjsoncons rlang RSQLite S4Vectors stringi stringr sys tibble tidyr tidyselect UCSC.utils utf8 vctrs withr XVector zlibbioc

UniProt.ws: A package for retrieving data from the UniProt web service

Marc Carlson

Rendered fromUniProt.ws.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2023-07-05
Started: 2022-12-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Mapping identifiers with the UniProt API	allFromKeys allToKeys cols mapUniProt queryUniProt returnFields
UniProt.ws objects and their related methods and functions	availableUniprotSpecies class:UniProt.ws columns columns,UniProt.ws-method keys keys,UniProt.ws-method keytypes keytypes,UniProt.ws-method lookupUniprotSpeciesFromTaxId select select,UniProt.ws-method show,UniProt.ws-method species species,UniProt.ws-method taxId taxId,UniProt.ws-method taxId<- taxId<-,UniProt.ws-method UniProt.ws UniProt.ws-class
Utility functions	taxname2domain taxname2species taxname2taxid utilities