Package: UCSC.utils 1.3.1

Hervé Pagès

UCSC.utils: Low-level utilities to retrieve data from the UCSC Genome Browser

A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.

Authors:Hervé Pagès [aut, cre]

UCSC.utils_1.3.1.tar.gz
UCSC.utils_1.3.1.zip(r-4.5)UCSC.utils_1.3.1.zip(r-4.4)UCSC.utils_1.3.1.zip(r-4.3)
UCSC.utils_1.3.1.tgz(r-4.4-any)UCSC.utils_1.3.1.tgz(r-4.3-any)
UCSC.utils_1.3.1.tar.gz(r-4.5-noble)UCSC.utils_1.3.1.tar.gz(r-4.4-noble)
UCSC.utils_1.3.1.tgz(r-4.4-emscripten)UCSC.utils_1.3.1.tgz(r-4.3-emscripten)
UCSC.utils.pdf |UCSC.utils.html
UCSC.utils/json (API)
NEWS

# Install 'UCSC.utils' in R:
install.packages('UCSC.utils', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/ucsc.utils/issues

On BioConductor:UCSC.utils-1.3.0(bioc 3.21)UCSC.utils-1.2.0(bioc 3.20)

infrastructuregenomeassemblyannotationgenomeannotationdataimportbioconductor-packagecore-package

10.08 score 1 stars 1.7k packages 4 scripts 53k downloads 7 exports 11 dependencies

Last updated 27 days agofrom:6e852499ba. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 16 2025
R-4.5-winOKJan 16 2025
R-4.5-linuxOKFeb 05 2025
R-4.4-winOKJan 16 2025
R-4.4-macOKJan 16 2025
R-4.3-winOKJan 16 2025
R-4.3-macOKJan 16 2025

Exports:fetch_UCSC_track_dataget_organism_for_UCSC_genomeget_UCSC_chrom_sizeslist_UCSC_genomeslist_UCSC_tracksUCSC_dbselectUCSC.api.url

Dependencies:askpassBiocGenericscurlgenericshttrjsonlitemimeopensslR6S4Vectorssys

The UCSC.utils package

Rendered fromUCSC.utils.Rmdusingknitr::rmarkdownon Jan 16 2025.

Last update: 2025-01-14
Started: 2024-03-15