| Title: | Companion data package for the ReactomeGSA package |
|---|---|
| Description: | Companion data sets to showcase the functionality of the ReactomeGSA package. This package contains proteomics and RNA-seq data of the melanoma B-cell induction study by Griss et al. and scRNA-seq data from Jerby-Arnon et al. |
| Authors: | Johannes Griss [aut, cre] (ORCID: <https://orcid.org/0000-0003-2206-9511>) |
| Maintainer: | Johannes Griss <[email protected]> |
| License: | Artistic-2.0 |
| Version: | 1.27.0 |
| Built: | 2026-10-10 10:42:51 UTC |
| Source: | https://github.com/bioc/ReactomeGSA.data |
The data is available as a EList object containing
the aggregated protein intensity values. Normalisation was already performed
on the PSM level prior to protein-level aggregation.
griss_melanoma_proteomicsgriss_melanoma_proteomics
An object of class EList with 6456 rows and 20 columns.
Johannes Griss [email protected]
Griss et al., Nat Commun. 2019 10(1):4186. doi: 10.1038/s41467-019-12160-2
The result is stored as a ReactomeAnalysisResult-class object.
griss_melanoma_resultgriss_melanoma_result
An object of class ReactomeAnalysisResult of length 1.
Johannes Griss [email protected]
Griss et al., Nat Commun. 2019 10(1):4186. doi: 10.1038/s41467-019-12160-2
The data is available as a DGEList object containing
read counts per gene.
griss_melanoma_rnaseqgriss_melanoma_rnaseq
An object of class DGEList with 58237 rows and 16 columns.
Johannes Griss [email protected]
Griss et al., Nat Commun. 2019 10(1):4186. doi: 10.1038/s41467-019-12160-2
This result is stored as a Seurat object.
jerby_b_cellsjerby_b_cells
An object of class Seurat with 23686 rows and 920 columns.
Jerby-Arnon et al., Cell 2018 1;175(4):984-997.e24. doi:10.1016/j.cell.2018.09.006