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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "zinbwave" in publications use:'
type: software
license: Artistic-2.0
title: 'zinbwave: Zero-Inflated Negative Binomial Model for RNA-Seq Data'
version: 1.27.0
abstract: Implements a general and flexible zero-inflated negative binomial model
  that can be used to provide a low-dimensional representations of single-cell RNA-seq
  data. The model accounts for zero inflation (dropouts), over-dispersion, and the
  count nature of the data. The model also accounts for the difference in library
  sizes and optionally for batch effects and/or other covariates, avoiding the need
  for pre-normalize the data.
authors:
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com
- family-names: Gribkova
  given-names: Svetlana
  email: svetlana.gribkova@mines-paristech.fr
- family-names: Perraudeau
  given-names: Fanny
  email: fperraudeau@berkeley.edu
- family-names: Vert
  given-names: Jean-Philippe
  email: jean-philippe.vert@mines-paristech.fr
- family-names: Bagatin
  given-names: Clara
  email: clarabagatin@yahoo.it
preferred-citation:
  type: article
  title: A general and flexible method for signal extraction from single-cell RNA-seq
    data
  authors:
  - family-names: Risso
    given-names: Davide
    email: risso.davide@gmail.com
  - family-names: Perraudeau
    given-names: Fanny
    email: fperraudeau@berkeley.edu
  - family-names: Gribkova
    given-names: Svetlana
    email: svetlana.gribkova@mines-paristech.fr
  - family-names: Dudoit
    given-names: Sandrine
  - family-names: Vert
    given-names: Jean-Philippe
    email: jean-philippe.vert@mines-paristech.fr
  year: '2018'
  volume: '9'
  journal: Nature Communications
  url: https://doi.org/10.1038/s41467-017-02554-5
  start: '284'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/drisso/zinbwave
url: https://github.com/drisso/zinbwave
contact:
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com