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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "xcore" in publications use:'
type: software
license: GPL-2.0-only
title: 'xcore: xcore expression regulators inference'
version: 1.9.0
abstract: xcore is an R package for transcription factor activity modeling based on
  known molecular signatures and user's gene expression data. Accompanying xcoredata
  package provides a collection of molecular signatures, constructed from publicly
  available ChiP-seq experiments. xcore use ridge regression to model changes in expression
  as a linear combination of molecular signatures and find their unknown activities.
  Obtained, estimates can be further tested for significance to select molecular signatures
  with the highest predicted effect on the observed expression changes.
authors:
- family-names: Migdał
  given-names: Maciej
  email: mcjmigdal@gmail.com
  orcid: https://orcid.org/0000-0002-8021-7263
- family-names: Kaczkowski
  given-names: Bogumił
  email: mcjmigdal@gmail.com
  orcid: https://orcid.org/0000-0001-6554-5608
repository: https://bioc.r-universe.dev
contact:
- family-names: Migdał
  given-names: Maciej
  email: mcjmigdal@gmail.com
  orcid: https://orcid.org/0000-0002-8021-7263