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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "wavClusteR" in publications use:'
type: software
license: GPL-2.0-only
title: 'wavClusteR: Sensitive and highly resolved identification of RNA-protein interaction
  sites in PAR-CLIP data'
version: 2.39.0
doi: 10.1093/nar/gks697
abstract: 'The package provides an integrated pipeline for the analysis of PAR-CLIP
  data. PAR-CLIP-induced transitions are first discriminated from sequencing errors,
  SNPs and additional non-experimental sources by a non- parametric mixture model.
  The protein binding sites (clusters) are then resolved at high resolution and cluster
  statistics are estimated using a rigorous Bayesian framework. Post-processing of
  the results, data export for UCSC genome browser visualization and motif search
  analysis are provided. In addition, the package allows to integrate RNA-Seq data
  to estimate the False Discovery Rate of cluster detection. Key functions support
  parallel multicore computing. Note: while wavClusteR was designed for PAR-CLIP data
  analysis, it can be applied to the analysis of other NGS data obtained from experimental
  procedures that induce nucleotide substitutions (e.g. BisSeq).'
authors:
- family-names: Comoglio
  given-names: Federico
  email: federico.comoglio@gmail.com
- family-names: Sievers
  given-names: Cem
preferred-citation:
  type: article
  title: Mixture models and wavelet transforms reveal high confidence RNA-protein
    interaction sites in MOV10 PAR-CLIP data
  authors:
  - family-names: Sievers
    given-names: Cem
  - family-names: Schlumpf
    given-names: Tommy
  - family-names: Sawarkar
    given-names: Ritwick
  - family-names: Comoglio
    given-names: Federico
    email: federico.comoglio@gmail.com
  - family-names: Paro
    given-names: Renato
  year: '2012'
  journal: Nucleic Acids Research
  volume: 40(20)
  doi: 10.1093/nar/gks697
  url: http://www.ncbi.nlm.nih.gov/pubmed/?term=sievers+comoglio
  start: e160
repository: https://bioc.r-universe.dev
date-released: '2015-05-07'
contact:
- family-names: Comoglio
  given-names: Federico
  email: federico.comoglio@gmail.com
references:
- type: article
  title: Sensitive and highly resolved identification of RNA-protein interaction sites
    in PAR-CLIP data.
  authors:
  - family-names: Comoglio
    given-names: Federico
  - family-names: Sievers
    given-names: Cem
  - family-names: Paro
    given-names: Renato
  year: '2015'
  journal: BMC Bioinformatics
  volume: '16'
  doi: 10.1186/s12859-015-0470-y
  url: http://www.biomedcentral.com/1471-2105/16/32/abstract
  start: '32'