Package: uncoverappLib
Title: Interactive graphical application for clinical assessment of
        sequence coverage at the base-pair level
Version: 1.23.0
Authors@R: c(
    person("Emanuela","Iovino", email = "emanuela.iovino@unibo.it", role= c("cre", "aut")),
    person("Tommaso", "Pippucci", email = "tommaso.pippucci@unibo.it", role = "aut"))
Imports: markdown, shiny, shinyjs, shinyBS,
        shinyWidgets,shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx,
        condformat, stringr, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache,rappdirs,
        TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils,S4Vectors,
        EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx,
        Rsamtools, GenomicRanges
Description: a Shiny application containing a suite of graphical and
        statistical tools to support clinical assessment of low
        coverage regions.It displays three web pages each providing a
        different analysis module: Coverage analysis, calculate AF by
        allele frequency app and binomial distribution. uncoverAPP
        provides a statisticl summary of coverage given target file or
        genes name.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
URL: https://github.com/Manuelaio/uncoverappLib
BugReports: https://github.com/Manuelaio/uncoverappLib/issues
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, testthat, rmarkdown, dplyr
biocViews: Software, Visualization, Annotation, Coverage
NeedsCompilation: no
Packaged: 2026-07-03 18:28:49 UTC; root
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:53:21 UTC
RemoteUrl: https://github.com/bioc/uncoverappLib
RemoteRef: HEAD
RemoteSha: 720fc62ecd775a91159f24021270f29da4421ff3
Author: Emanuela Iovino [cre, aut],
  Tommaso Pippucci [aut]
Maintainer: Emanuela Iovino <emanuela.iovino@unibo.it>