Package: uSORT
Title: uSORT: A self-refining ordering pipeline for gene selection
Version: 1.39.0
Author: Mai Chan Lau, Hao Chen, Jinmiao Chen
Description: This package is designed to uncover the intrinsic cell
        progression path from single-cell RNA-seq data. It incorporates
        data pre-processing, preliminary PCA gene selection,
        preliminary cell ordering, feature selection, refined cell
        ordering, and post-analysis interpretation and visualization.
Maintainer: Hao Chen <chen_hao@immunol.a-star.edu.sg>
biocViews: ImmunoOncology, RNASeq, GUI, CellBiology, DNASeq
Depends: R (>= 3.3.0), tcltk
VignetteBuilder: knitr
Suggests: knitr, RUnit, testthat, ggplot2
Imports: igraph, Matrix, RANN, RSpectra, VGAM, gplots, parallel, plyr,
        methods, cluster, Biobase, fpc, BiocGenerics, monocle,
        grDevices, graphics, stats, utils
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 5.0.1
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:44:16 UTC
RemoteUrl: https://github.com/bioc/uSORT
RemoteRef: HEAD
RemoteSha: ea64dabbac25db00016f1fc0b205778ff591cc0a
NeedsCompilation: no
Packaged: 2026-07-02 07:25:20 UTC; root