tximportData

This packages provides output files from common transcript estimation software (Salmon, Kallisto, RSEM, Cufflinks, etc.) for demonstration of import using tximport. The files are a subset of 2 samples from the GEUVADIS project (6 for Cufflinks). Inferential replicate data and the full set of 6 samples from earlier versions are archived on Zenodo: https://doi.org/10.5281/zenodo.22982575

The citation for the GEUVADIS project is:

Lappalainen et al, "Transcriptome and genome sequencing uncovers functional variation in humans", Nature, 2013.

http://www.nature.com/nature/journal/v501/n7468/full/nature12531.html?WT.ec_id=NATURE-20130926

list.files(system.file("extdata",package="tximportData"))

See vignette for more details on all files included in this package.