Package: tximeta
Version: 1.31.4
Title: Transcript Quantification Import with Automatic Metadata
Description: Transcript quantification import from Salmon and other
        quantifiers with automatic attachment of transcript ranges and
        release information, and other associated metadata. De novo
        transcriptomes can be linked to the appropriate sources with
        linkedTxomes and shared for computational reproducibility.
Authors@R: c(
    person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = c("aut","cre")),
    person("Charlotte", "Soneson", role = c("aut","ctb")),
    person("Peter", "Hickey", role = c("aut","ctb")),
    person("Rob", "Patro", role = c("aut","ctb")),
    person("NIH NHGRI", role="fnd"),
    person("CZI", role="fnd")
    )
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
License: GPL-2
VignetteBuilder: knitr, rmarkdown
Depends: R (>= 4.1.0)
Imports: SummarizedExperiment (>= 1.39.1), tximport, jsonlite,
        S4Vectors, IRanges, GenomicRanges (>= 1.61.1), AnnotationDbi,
        DBI, GenomicFeatures, txdbmaker, ensembldb, BiocFileCache,
        AnnotationHub, Biostrings, tibble, Seqinfo, tools, utils,
        methods, Matrix
Suggests: knitr, rmarkdown, testthat, tximportData (>= 1.37.5),
        org.Dm.eg.db, DESeq2, edgeR (>= 4.9.2), limma, devtools,
        macrophage
URL: https://thelovelab.github.io/tximeta,
        https://github.com/thelovelab/tximeta
biocViews: Annotation, GenomeAnnotation, DataImport, Preprocessing,
        RNASeq, LongRead, SingleCell, Transcriptomics, Transcription,
        GeneExpression, FunctionalGenomics, ReproducibleResearch,
        ReportWriting, ImmunoOncology
Roxygen: list(markdown = TRUE)
Encoding: UTF-8
Config/Needs/website: r-lib/pkgdown
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-15 18:24:52 UTC
RemoteUrl: https://github.com/bioc/tximeta
RemoteRef: HEAD
RemoteSha: 6825c7f4a6e3cb8633d93a22739bc02d5beef201
NeedsCompilation: no
Packaged: 2026-06-18 11:18:52 UTC; root
Author: Michael Love [aut, cre],
  Charlotte Soneson [aut, ctb],
  Peter Hickey [aut, ctb],
  Rob Patro [aut, ctb],
  NIH NHGRI [fnd],
  CZI [fnd]