NEWS
txdbmaker 1.2.0
SIGNIFICANT USER-VISIBLE CHANGES
- Adjust makeTxDbFromBiomart() examples to reflect breaking change
in Ensembl 113. See commit a5a885d for the details.
BUG FIXES
- Small fix to internal helper .Ensembl_getMySQLCoreDir(). See commit
aa586a6 for the details.
txdbmaker 1.0.0
- The txdbmaker package is a spin-off from the GenomicFeatures package.
It includes the following functions, all of them originally from the
GenomicFeatures package:
- browseUCSCtrack
- getChromInfoFromBiomart
- makeFDbPackageFromUCSC
- makeFeatureDbFromUCSC
- makePackageName
- makeTxDb
- makeTxDbFromBiomart
- makeTxDbFromEnsembl
- makeTxDbFromGFF
- makeTxDbFromGRanges
- makeTxDbFromUCSC
- makeTxDbPackage
- makeTxDbPackageFromBiomart
- makeTxDbPackageFromUCSC
- supportedMiRBaseBuildValues
- supportedUCSCFeatureDbTables
- supportedUCSCFeatureDbTracks
- supportedUCSCtables
- UCSCFeatureDbTableSchema