Package: txcutr
Title: Transcriptome CUTteR
Description: Various mRNA sequencing library preparation methods
        generate sequencing reads specifically from the transcript
        ends. Analyses that focus on quantification of isoform usage
        from such data can be aided by using truncated versions of
        transcriptome annotations, both at the alignment or
        pseudo-alignment stage, as well as in downstream analysis. This
        package implements some convenience methods for readily
        generating such truncated annotations and their corresponding
        sequences.
Version: 1.19.0
Date: 2025-09-07
Authors@R: 
    person(given = "Mervin",
           family = "Fansler",
           role = c("aut", "cre"),
           email = "mervin.fansler@bric.ku.dk",
           comment = c(ORCID = "0000-0002-4108-4218"))
License: GPL-3
URL: https://github.com/mfansler/txcutr
BugReports: https://github.com/mfansler/txcutr/issues
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, GenomicFeatures, txdbmaker, IRanges,
        GenomicRanges, BiocGenerics, Biostrings, S4Vectors,
        rtracklayer, BiocParallel, stats, methods, utils
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Alignment, Annotation, RNASeq, Sequencing, Transcriptomics
Suggests: RefManageR, BiocStyle, knitr, sessioninfo, rmarkdown,
        testthat (>= 3.0.0), TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
        BSgenome.Scerevisiae.UCSC.sacCer3, GenomeInfoDbData
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:25 UTC
RemoteUrl: https://github.com/bioc/txcutr
RemoteRef: HEAD
RemoteSha: f77e877da0650ce6b75bbc781bfd2b5f7dcd892f
NeedsCompilation: no
Packaged: 2026-07-05 02:58:39 UTC; root
Author: Mervin Fansler [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4108-4218>)
Maintainer: Mervin Fansler <mervin.fansler@bric.ku.dk>