Package: triplex
Type: Package
Title: Search and visualize intramolecular triplex-forming sequences in
        DNA
Version: 1.53.0
Date: 2013-09-28
Authors@R: c(person("Jiri", "Hon", role = c("aut", "cre"),
                    email = "jiri.hon@gmail.com"),
             person("Matej", "Lexa", role = "aut",
                    email = "lexa@fi.muni.cz"),
             person("Tomas", "Martinek", role = "aut",
                    email = "martinto@fit.vutbr.cz"),
             person("Kamil", "Rajdl", role = "aut"),
             person("Daniel", "Kopecek", role = "ctb"))
Author: Jiri Hon, Matej Lexa, Tomas Martinek and Kamil Rajdl with
        contributions from Daniel Kopecek
Maintainer: Jiri Hon <jiri.hon@gmail.com>
Description: This package provides functions for identification and
        visualization of potential intramolecular triplex patterns in
        DNA sequence. The main functionality is to detect the positions
        of subsequences capable of folding into an intramolecular
        triplex (H-DNA) in a much larger sequence. The potential H-DNA
        (triplexes) should be made of as many cannonical nucleotide
        triplets as possible. The package includes visualization
        showing the exact base-pairing in 1D, 2D or 3D.
License: BSD_2_clause + file LICENSE
URL: http://www.fi.muni.cz/~lexa/triplex/
biocViews: SequenceMatching, GeneRegulation
Depends: R (>= 2.15.0), S4Vectors (>= 0.5.14), IRanges (>= 2.5.27),
        XVector (>= 0.11.6), Biostrings (>= 2.39.10)
Imports: methods, grid, GenomicRanges
Suggests: rgl (>= 0.93.932), BSgenome.Celegans.UCSC.ce10, rtracklayer
LinkingTo: S4Vectors, IRanges, XVector, Biostrings
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:39 UTC
RemoteUrl: https://github.com/bioc/triplex
RemoteRef: HEAD
RemoteSha: 85da80e540c05e87f675ba97fc02355fffce83bb
NeedsCompilation: yes
Packaged: 2026-07-03 12:03:48 UTC; root