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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "tricycle" in publications use:'
type: software
license: GPL-3.0-only
title: 'tricycle: tricycle: Transferable Representation and Inference of cell cycle'
version: 1.13.0
doi: 10.1186/s13059-021-02581-y
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tricycle
abstract: The package contains functions to infer and visualize cell cycle process
  using Single Cell RNASeq data. It exploits the idea of transfer learning, projecting
  new data to the previous learned biologically interpretable space. We provide a
  pre-learned cell cycle space, which could be used to infer cell cycle time of human
  and mouse single cell samples. In addition, we also offer functions to visualize
  cell cycle time on different embeddings and functions to build new reference.
authors:
- family-names: Zheng
  given-names: Shijie
  email: shijieczheng@gmail.com
preferred-citation:
  type: article
  title: Universal prediction of cell cycle position using transfer learning
  authors:
  - family-names: Zheng
    given-names: Shijie C.
  - family-names: Stein-O'Brien
    given-names: Genevieve
  - family-names: Augustin
    given-names: Jonathan J.
  - family-names: Slosberg
    given-names: Jared
  - family-names: Carosso
    given-names: Giovanni A.
  - family-names: Winer
    given-names: Briana
  - family-names: Shin
    given-names: Gloria
  - family-names: Bjornsson
    given-names: Hans T.
  - family-names: Goff
    given-names: Loyal A.
  - family-names: Hansen
    given-names: Kasper D.
  journal: Genome Biology
  volume: '23'
  year: '2022'
  doi: 10.1186/s13059-021-02581-y
  start: '41'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/hansenlab/tricycle
commit: f3ce911d399484228b111ff640a15d97ea551a1f
url: https://github.com/hansenlab/tricycle
contact:
- family-names: Zheng
  given-names: Shijie
  email: shijieczheng@gmail.com