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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "treeclimbR" in publications use:'
type: software
license: Artistic-2.0
title: 'treeclimbR: An algorithm to find optimal signal levels in a tree'
version: 1.1.0
doi: 10.1186/s13059-021-02368-1
abstract: The arrangement of hypotheses in a hierarchical structure appears in many
  research fields and often indicates different resolutions at which data can be viewed.
  This raises the question of which resolution level the signal should best be interpreted
  on. treeclimbR provides a flexible method to select optimal resolution levels (potentially
  different levels in different parts of the tree), rather than cutting the tree at
  an arbitrary level. treeclimbR uses a tuning parameter to generate candidate resolutions
  and from these selects the optimal one.
authors:
- family-names: Huang
  given-names: Ruizhu
  email: ruizhuRH@gmail.com
  orcid: https://orcid.org/0000-0003-3285-1945
- family-names: Soneson
  given-names: Charlotte
  email: charlottesoneson@gmail.com
  orcid: https://orcid.org/0000-0003-3833-2169
preferred-citation:
  type: article
  title: treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses
  authors:
  - family-names: Huang
    given-names: Ruizhu
    email: ruizhuRH@gmail.com
    orcid: https://orcid.org/0000-0003-3285-1945
  - family-names: Soneson
    given-names: Charlotte
    email: charlottesoneson@gmail.com
    orcid: https://orcid.org/0000-0003-3833-2169
  - family-names: Germain
    given-names: Pierre-Luc
  - family-names: Schmidt
    given-names: Thomas SB
  - family-names: Mering
    given-names: Christian
    name-particle: von
  - family-names: Robinson
    given-names: Mark D
  journal: Genome Biology
  year: '2021'
  volume: '22'
  issue: '1'
  doi: 10.1186/s13059-021-02368-1
  start: '157'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/csoneson/treeclimbR
url: https://github.com/csoneson/treeclimbR
date-released: '2024-04-10'
contact:
- family-names: Soneson
  given-names: Charlotte
  email: charlottesoneson@gmail.com
  orcid: https://orcid.org/0000-0003-3833-2169