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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "transomics2cytoscape" in publications use:'
type: software
license: Artistic-2.0
title: 'transomics2cytoscape: A tool set for 3D Trans-Omic network visualization with
  Cytoscape'
version: 1.15.0
abstract: transomics2cytoscape generates a file for 3D transomics visualization by
  providing input that specifies the IDs of multiple KEGG pathway layers, their corresponding
  Z-axis heights, and an input that represents the edges between the pathway layers.
  The edges are used, for example, to describe the relationships between kinase on
  a pathway and enzyme on another pathway. This package automates creation of a transomics
  network as shown in the figure in Yugi.2014 (https://doi.org/10.1016/j.celrep.2014.07.021)
  using Cytoscape automation (https://doi.org/10.1186/s13059-019-1758-4).
authors:
- family-names: Nishida
  given-names: Kozo
  email: kozo.nishida@gmail.com
  orcid: https://orcid.org/0000-0001-8501-7319
- family-names: Yugi
  given-names: Katsuyuki
  email: katsuyuki.yugi@riken.jp
  orcid: https://orcid.org/0000-0002-2046-4289
repository: https://bioc.r-universe.dev
contact:
- family-names: Nishida
  given-names: Kozo
  email: kozo.nishida@gmail.com
  orcid: https://orcid.org/0000-0001-8501-7319