# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "transite" in publications use:'
type: software
license: MIT
title: 'transite: RNA-binding protein motif analysis'
version: 1.23.0
doi: 10.1016/j.celrep.2020.108064
identifiers:
- type: doi
  value: 10.32614/CRAN.package.transite
abstract: transite is a computational method that allows comprehensive analysis of
  the regulatory role of RNA-binding proteins in various cellular processes by leveraging
  preexisting gene expression data and current knowledge of binding preferences of
  RNA-binding proteins.
authors:
- family-names: Krismer
  given-names: Konstantin
  email: krismer@mit.edu
  orcid: https://orcid.org/0000-0001-8994-3416
- family-names: Gattinger
  given-names: Anna
  email: anna.gattinger@risc-software.at
  orcid: https://orcid.org/0000-0001-7094-9279
preferred-citation:
  type: article
  title: 'Transite: A computational motif-based analysis platform that identifies
    RNA-binding proteins modulating changes in gene expression'
  authors:
  - family-names: Krismer
    given-names: Konstantin
    email: krismer@mit.edu
    orcid: https://orcid.org/0000-0001-8994-3416
  - family-names: Bird
    given-names: Molly A.
  - family-names: Varmeh
    given-names: Shohreh
  - family-names: Handly
    given-names: Erika D.
  - family-names: Gattinger
    given-names: Anna
    email: anna.gattinger@risc-software.at
    orcid: https://orcid.org/0000-0001-7094-9279
  - family-names: Bernwinkler
    given-names: Thomas
  - family-names: Anderson
    given-names: Daniel A.
  - family-names: Heinzel
    given-names: Andreas
  - family-names: Joughin
    given-names: Brian A.
  - family-names: Kong
    given-names: Yi Wen
  - family-names: Cannell
    given-names: Ian G.
  - family-names: Yaffe
    given-names: Michael B.
  year: '2020'
  volume: '32'
  doi: 10.1016/j.celrep.2020.108064
  publisher:
    name: Elsevier
  url: https://doi.org/10.1016/j.celrep.2020.108064
  journal: Cell Reports
repository: https://bioc.r-universe.dev
commit: 1dd208c3aa7b2600bda43209e513e1ab6934842b
url: https://transite.mit.edu
contact:
- family-names: Krismer
  given-names: Konstantin
  email: krismer@mit.edu
  orcid: https://orcid.org/0000-0001-8994-3416