Changes in version 1.20.0 o Bioconductor 3.18 release Changes in version 1.18.0 o Bioconductor 3.17 release Changes in version 1.16.0 o Bioconductor 3.16 release Changes in version 1.14.0 o Bioconductor 3.15 release Changes in version 1.12.1 o Fix typos Changes in version 1.12.0 o Bioconductor 3.14 release Changes in version 1.10.0 o Bioconductor 3.13 release Changes in version 1.8.0 o Bioconductor 3.12 release o added limits argument for spectrum plot x-values to harmonize color scale of multiple spectrum plots o replaced Rcpp::RcppArmadillo::sample() with now fixed Rcpp::sample() Changes in version 1.6.2 o updated paper references o fixed minor formatting issues o incremented Roxygen2 version Changes in version 1.6.0 o Bioconductor 3.11 release o changed function names to adhere to tidyverse style guide (breaking change) o change method names to adhere to tidyverse style guide (breaking change) o changed parameter names to adhere to tidyverse style guide (breaking change) o changed internal variable names to adhere to tidyverse style guide o fixed issue with mixed cached and uncached sequences o added unit tests o fixed issue with uninitialized IUPAC table o removed unused C++ functions o gracefully stop cluster after parLapply o added transcript values overlay to spectrum plots o fixed issue due to floating point machine precision o improved efficiency of transcript set shuffling o replaced Rcpp::sample() with Rcpp::RcppArmadillo::sample() to avoid memory leak o fix roxygen annotation for package data Changes in version 1.4.0 o Bioconductor 3.10 release Changes in version 1.2.1 o updated author list Changes in version 1.2.0 o Bioconductor 3.9 release Changes in version 1.0.2 o clarified return value description of k-mer-based TSMA o updated roxygen2 o updated license o clarified argument description of SPMA o fixed issue with multi-threaded cluster environment Changes in version 1.0.1 o fixed typo in vignette o added code example for drawVolcanoPlot function o increased size of circles for motif-associated k-mers in drawVolcanoPlot function Changes in version 1.0.0 o initial release on Bioconductor 3.8 release branch Changes in version 0.99.4 o initial release on Bioconductor