NEWS
transite 1.20.0
- Bioconductor 3.18 release
transite 1.18.0
- Bioconductor 3.17 release
transite 1.16.0
- Bioconductor 3.16 release
transite 1.14.0
- Bioconductor 3.15 release
transite 1.12.1
transite 1.12.0
- Bioconductor 3.14 release
transite 1.10.0
- Bioconductor 3.13 release
transite 1.8.0
- Bioconductor 3.12 release
- added limits argument for spectrum plot x-values to harmonize color scale
of multiple spectrum plots
- replaced Rcpp::RcppArmadillo::sample() with now fixed Rcpp::sample()
transite 1.6.2
- updated paper references
- fixed minor formatting issues
- incremented Roxygen2 version
transite 1.6.0
- Bioconductor 3.11 release
- changed function names to adhere to tidyverse style guide
(breaking change)
- change method names to adhere to tidyverse style guide (breaking change)
- changed parameter names to adhere to tidyverse style guide
(breaking change)
- changed internal variable names to adhere to tidyverse style guide
- fixed issue with mixed cached and uncached sequences
- added unit tests
- fixed issue with uninitialized IUPAC table
- removed unused C++ functions
- gracefully stop cluster after parLapply
- added transcript values overlay to spectrum plots
- fixed issue due to floating point machine precision
- improved efficiency of transcript set shuffling
- replaced Rcpp::sample() with Rcpp::RcppArmadillo::sample() to avoid
memory leak
- fix roxygen annotation for package data
transite 1.4.0
- Bioconductor 3.10 release
transite 1.2.1
transite 1.2.0
transite 1.0.2
- clarified return value description of k-mer-based TSMA
- updated roxygen2
- updated license
- clarified argument description of SPMA
- fixed issue with multi-threaded cluster environment
transite 1.0.1
- fixed typo in vignette
- added code example for drawVolcanoPlot function
- increased size of circles for motif-associated k-mers in drawVolcanoPlot
function
transite 1.0.0
- initial release on Bioconductor 3.8 release branch
transite 0.99.4
- initial release on Bioconductor