Package: transite
Title: RNA-binding protein motif analysis
Version: 1.31.0
Authors@R: 
    c(person(given = "Konstantin",
             family = "Krismer",
             role = c("aut", "cre", "cph"),
             email = "krismer@mit.edu",
             comment = c(ORCID = "0000-0001-8994-3416")),
      person(given = "Anna",
             family = "Gattinger",
             role = "aut",
             email = "anna.gattinger@risc-software.at",
             comment = c(ORCID = "0000-0001-7094-9279")),
      person(given = "Michael",
             family = "Yaffe",
             role = c("ths", "cph"),
             email = "myaffe@mit.edu",
             comment = c(ORCID = "0000-0002-9547-3251")),
      person(given = "Ian",
             family = "Cannell",
             role = "ths",
             email = "icannell@mit.edu",
             comment = c(ORCID = "0000-0001-5832-9210")))
Maintainer: Konstantin Krismer <krismer@mit.edu>
Description: transite is a computational method that allows
        comprehensive analysis of the regulatory role of RNA-binding
        proteins in various cellular processes by leveraging
        preexisting gene expression data and current knowledge of
        binding preferences of RNA-binding proteins.
License: MIT + file LICENSE
URL: https://transite.mit.edu
Depends: R (>= 3.5)
Imports: BiocGenerics (>= 0.26.0), Biostrings (>= 2.48.0), dplyr (>=
        0.7.6), GenomicRanges (>= 1.32.6), ggplot2 (>= 3.0.0),
        grDevices, gridExtra (>= 2.3), methods, parallel, Rcpp (>=
        1.0.4.8), scales (>= 1.0.0), stats, TFMPvalue (>= 0.0.8),
        stringr (>= 1.5.1), utils
Suggests: knitr (>= 1.20), rmarkdown (>= 1.10), roxygen2 (>= 6.1.0),
        testthat (>= 2.1.0)
LinkingTo: Rcpp (>= 1.0.4.8)
VignetteBuilder: knitr
biocViews: GeneExpression, Transcription, DifferentialExpression,
        Microarray, mRNAMicroarray, Genetics, GeneSetEnrichment
Encoding: UTF-8
RoxygenNote: 7.3.3
SystemRequirements: C++11
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:56 UTC
RemoteUrl: https://github.com/bioc/transite
RemoteRef: HEAD
RemoteSha: 840af6551d389369e063dbbe47e582105e09b91f
NeedsCompilation: yes
Packaged: 2026-07-03 22:34:39 UTC; root
Author: Konstantin Krismer [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-8994-3416>),
  Anna Gattinger [aut] (ORCID: <https://orcid.org/0000-0001-7094-9279>),
  Michael Yaffe [ths, cph] (ORCID:
    <https://orcid.org/0000-0002-9547-3251>),
  Ian Cannell [ths] (ORCID: <https://orcid.org/0000-0001-5832-9210>)