Package: transcriptogramer Type: Package Title: Transcriptional analysis based on transcriptograms Version: 1.35.0 Date: 2019-12-13 Authors@R: c( person("Diego", "Morais", email = "vinx@ufrn.edu.br", role = c("aut", "cre")), person("Rodrigo", "Dalmolin", email = "rodrigo.dalmolin@imd.ufrn.br", role = "aut")) Description: R package for transcriptional analysis based on transcriptograms, a method to analyze transcriptomes that projects expression values on a set of ordered proteins, arranged such that the probability that gene products participate in the same metabolic pathway exponentially decreases with the increase of the distance between two proteins of the ordering. Transcriptograms are, hence, genome wide gene expression profiles that provide a global view for the cellular metabolism, while indicating gene sets whose expressions are altered. Depends: R (>= 3.4), methods License: GPL (>= 2) Encoding: UTF-8 LazyData: true biocViews: Software, Network, Visualization, SystemsBiology, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Clustering, DifferentialExpression, Microarray, RNASeq, Transcription, ImmunoOncology Imports: biomaRt, data.table, doSNOW, foreach, ggplot2, graphics, grDevices, igraph, limma, parallel, progress, RedeR, snow, stats, tidyr, topGO RoxygenNote: 6.1.1 VignetteBuilder: knitr Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics SystemRequirements: Java Runtime Environment (>= 6) URL: https://github.com/arthurvinx/transcriptogramer BugReports: https://github.com/arthurvinx/transcriptogramer/issues Config/pak/sysreqs: libglpk-dev default-jdk libicu-dev libpng-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:46:54 UTC RemoteUrl: https://github.com/bioc/transcriptogramer RemoteRef: HEAD RemoteSha: d14dd1a87606fe96c6428f8f37b5788fc9b3a6a8 NeedsCompilation: no Packaged: 2026-07-06 06:39:57 UTC; root Author: Diego Morais [aut, cre], Rodrigo Dalmolin [aut] Maintainer: Diego Morais