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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "toppgene" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'toppgene: Gene List Enrichment Analysis using the ToppGene Suite'
version: 1.1.1
doi: 10.1186/1471-2105-8-392
identifiers:
- type: doi
  value: 10.32614/CRAN.package.toppgene
abstract: The ToppGene Suite is a one-stop portal for gene list enrichment analysis
  and candidate gene prioritization based on functional annotations and protein interactions
  network. Although the ToppCluster web application provides convenient graphical
  access to the ToppGene Suite, the OpenAPI 3.0 compliant interface of ToppGene is
  better suited for automation and reproducibility. This package includes Bioconductor
  class interfaces and biological examples.
authors:
- name: Pariksheet Nanda
  email: pan79@pitt.edu
  orcid: https://orcid.org/0000-0001-9726-4552
preferred-citation:
  type: article
  title: Improved human disease candidate gene prioritization using mouse phenotype
  authors:
  - family-names: Chen
    given-names: Jing
  - family-names: Xu
    given-names: Huan
  - family-names: Aronow
    given-names: Bruce J.
  - family-names: Jegga
    given-names: Anil G.
  volume: '8'
  issn: 1471-2105
  doi: 10.1186/1471-2105-8-392
  issue: '1'
  journal: BMC Bioinformatics
  month: '12'
  year: '2007'
  start: '392'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ImmuSystems-lab/toppgene
commit: 1c21c29c822006ba36b30023804ae983ccc5fa45
url: https://github.com/ImmuSystems-lab/toppgene
date-released: '2026-04-30'
contact:
- name: Pariksheet Nanda
  email: pan79@pitt.edu
  orcid: https://orcid.org/0000-0001-9726-4552
references:
- type: article
  title: 'ToppCluster: a multiple gene list feature analyzer for comparative enrichment
    clustering and network-based dissection of biological systems'
  authors:
  - family-names: Kaimal
    given-names: Vivek
  - family-names: Bardes
    given-names: Eric E.
  - family-names: Tabar
    given-names: Scott C.
  - family-names: Jegga
    given-names: Anil G.
  - family-names: Aronow
    given-names: Bruce J.
  volume: '38'
  copyright: http://creativecommons.org/licenses/by-nc/2.5
  issn: 1362-4962
  doi: 10.1093/nar/gkq418
  issue: Web Server
  journal: Nucleic Acids Research
  month: '7'
  year: '2010'
  start: W96
  end: W102