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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "topdownr" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'topdownr: Investigation of Fragmentation Conditions in Top-Down Proteomics'
version: 1.27.0
doi: 10.1021/acs.analchem.8b02344
abstract: The topdownr package allows automatic and systemic investigation of fragment
  conditions. It creates Thermo Orbitrap Fusion Lumos method files to test hundreds
  of fragmentation conditions. Additionally it provides functions to analyse and process
  the generated MS data and determine the best conditions to maximise overall fragment
  coverage.
authors:
- family-names: Gibb
  given-names: Sebastian
  email: mail@sebastiangibb.de
  orcid: https://orcid.org/0000-0001-7406-4443
- family-names: Shliaha
  given-names: Pavel
  email: pavels@bmb.sdu.dk
  orcid: https://orcid.org/0000-0003-3092-0724
- family-names: Jensen
  given-names: Ole Nørregaard
  email: jenseno@bmb.sdu.dk
  orcid: https://orcid.org/0000-0003-1862-8528
preferred-citation:
  type: article
  title: Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multi-modal
    Gas-phase Protein Fragmentation.
  authors:
  - family-names: Shliaha
    given-names: Pavel Vyacheslavovich
    email: pavels@bmb.sdu.dk
  - family-names: Gibb
    given-names: Sebastian
    email: mail@sebastiangibb.de
    orcid: https://orcid.org/0000-0001-7406-4443
  - family-names: Gorshkov
    given-names: Vladimir
  - family-names: Jespersen
    given-names: Malena Schack
  - family-names: Andersen
    given-names: Gregers R.
  - family-names: Bailey
    given-names: Derek
  - family-names: Schwartz
    given-names: Jacob
  - family-names: Eliuk
    given-names: Shannon
  - family-names: Schwämmle
    given-names: Veit
  - family-names: Jensen
    given-names: Ole Nørregaard
    email: jenseno@bmb.sdu.dk
    orcid: https://orcid.org/0000-0003-1862-8528
  volume: '90'
  issue: '21'
  year: '2018'
  doi: 10.1021/acs.analchem.8b02344
  url: https://pubs.acs.org/doi/10.1021/acs.analchem.8b02344
  journal: Analytical Chemistry
  publisher:
    name: American Chemical Society
  start: '12519'
  end: '12526'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/sgibb/topdownr/issues/
url: https://github.com/sgibb/topdownr/
contact:
- family-names: Gibb
  given-names: Sebastian
  email: mail@sebastiangibb.de
  orcid: https://orcid.org/0000-0001-7406-4443