NEWS

---

topconfects 1.23.2

• Signed color palette in plot_confects_me2().

topconfects 1.23.1

• Add plot_confects_me2().

topconfects 1.17.1

• Colored points in plot_confects_me().

topconfects 1.5.3

• Small tweaks to better display weitrix_confect outputs.
• Less digits when print()ed.

topconfects 1.5.2

• nest_confects now copes with NA p-values.

topconfects 1.5.1

• Fix limits calculation for confects_plot.

topconfects 1.3.1

• Fix y axis labels on confects_plot

topconfects 1.1.4 (2018-12-29)

• Prepare for Bioconductor submission.

topconfects 1.1.3 (2018-11-14)

• Add "full" output option for limma_confects and normal_confects, which adds se, df, and fdr_zero columns.

topconfects 1.1.2 (2018-06-30)

• Add DESeq2 support.
• Code to do with non-linear effect sizes has been move to the "ql" branch on github, pending publication of the basic method and a possible rethink and use of a simpler method.

topconfects 1.1.1 (2019-09-20)

• Update citation information.

topconfects 1.0.1 (2018-02-04)

• Initial release.

topconfects 0.99.5 (2019-02-18)

• Include a vignette giving an overview of the package's functions.

topconfects 0.99.4 (2019-02-06)

• Reduce build time of vignette.

topconfects 0.99.3 (2019-02-05)

• Where :: is used, use requireNamespace first to give an informative error message.
• Use match.arg in edger_confects.
• More tests.

topconfects 0.99.2 (2019-01-15)

• Version bumped to test web-hook and Bioconductor automated build system.

topconfects 0.99.1 (2018-12-30)

• Switch to required version number for Bioconductor submission.
• Switch email to address subscribed to bioc-devel.
• Require R 3.6.