To cite tilingArray in publications use: Wolfgang Huber and Joern Toedling and Lars M. Steinmetz Transcript mapping with high-density oligonucleotide tiling arrays. Bioinformatics 22, 1963-1970 (2006). A BibTeX entry for LaTeX users is @Article{, author = {Wolfgang Huber and Joern Toedling and Lars M. Steinmetz}, title = {Transcript mapping with high-density oligonucleotide tiling arrays}, journal = {Bioinformatics}, year = {2006}, volume = {22}, pages = {1963-1970}, } We have invested a lot of time and effort in creating the tilingArray package, please cite it when using it for data analysis.