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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "tilingArray" in publications use:'
type: software
license: Artistic-2.0
title: 'tilingArray: Transcript mapping with high-density oligonucleotide tiling arrays'
version: 1.83.0
abstract: 'The package provides functionality that can be useful for the analysis
  of high-density tiling microarray data (such as from Affymetrix genechips) for measuring
  transcript abundance and architecture. The main functionalities of the package are:
  1. the class ''segmentation'' for representing partitionings of a linear series
  of data; 2. the function ''segment'' for fitting piecewise constant models using
  a dynamic programming algorithm that is both fast and exact; 3. the function ''confint''
  for calculating confidence intervals using the strucchange package; 4. the function
  ''plotAlongChrom'' for generating pretty plots; 5. the function ''normalizeByReference''
  for probe-sequence dependent response adjustment from a (set of) reference hybridizations.'
authors:
- family-names: Xu
  given-names: Zhenyu
  email: zxu@embl.de
- family-names: Huber
  given-names: Wolfgang
- family-names: Ritchie
  given-names: Joern Toedling with contributions from Matt
preferred-citation:
  type: article
  title: Transcript mapping with high-density oligonucleotide tiling arrays
  authors:
  - family-names: Huber
    given-names: Wolfgang
  - family-names: Toedling
    given-names: Joern
  - family-names: Steinmetz
    given-names: Lars M.
  journal: Bioinformatics
  year: '2006'
  volume: '22'
  start: 1963-1970
repository: https://bioc.r-universe.dev
contact:
- family-names: Xu
  given-names: Zhenyu
  email: zxu@embl.de