Package: tidyomics
Title: Easily install and load the tidyomics ecosystem
Version: 1.9.0
Authors@R: c(
    person(given = "Stefano",
           family = "Mangiola",
           role = c("aut", "cre"),
           email = "mangiolastefano@gmail.com",
           comment = c(ORCID = "0000-0001-7474-836X")),
    person(given = "Michael",
           family = "Love",
           role = c("aut"),
           email = "michaelisaiahlove@gmail.com",
           comment = c(ORCID = "0000-0001-8401-0545")),
    person(given = "William",
           family = "Hutchison",
           role = c("aut"),
           email = "hutchison.w@wehi.edu.au",
           comment = c(ORCID = "0009-0001-6242-4269"))
	   )
Description: The tidyomics ecosystem is a set of packages for ’omic
        data analysis that work together in harmony; they share common
        data representations and API design, consistent with the
        tidyverse ecosystem. The tidyomics package is designed to make
        it easy to install and load core packages from the tidyomics
        ecosystem with a single command.
License: MIT + file LICENSE
URL: https://github.com/tidyomics/tidyomics
BugReports: https://github.com/tidyomics/tidyomics/issues
Depends: R (>= 4.2)
Imports: tidySummarizedExperiment, tidySingleCellExperiment,
        tidySpatialExperiment, tidyseurat, plyranges, purrr, rlang,
        stringr, cli,
Suggests: utils, tidyr, dplyr, tibble, ggplot2, mockr (>= 0.2.0), knitr
        (>= 1.41), rmarkdown (>= 2.20), testthat (>= 3.1.6),
        nullranges, tidybulk, plyinteractions
VignetteBuilder: knitr
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libbz2-dev libicu-dev liblzma-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev python3 xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:22 UTC
RemoteUrl: https://github.com/bioc/tidyomics
RemoteRef: HEAD
RemoteSha: a7fbe5a3f6ceb70a04b5a0dd105b5ec541b5d8e2
NeedsCompilation: no
Packaged: 2026-06-10 06:45:35 UTC; root
Author: Stefano Mangiola [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7474-836X>),
  Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>),
  William Hutchison [aut] (ORCID:
    <https://orcid.org/0009-0001-6242-4269>)
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>