Changes in version 0.99.16                       

  - Fixed multi-omics latent factor naming.

                       Changes in version 0.99.15                       

  - Bump version for Bioconductor release.

                       Changes in version 0.99.14                       

  - Fixed extract top factor features MCIA factor mapping.
  - Updated Zenodo download to incorporate a checksums validation.

                       Changes in version 0.99.13                       

  - Fixed run_association function to take factors from MCIA.
  - Added function to perform pairwise exposure-omics association
    testing.

                       Changes in version 0.99.12                       

  - Removing .Rproj.user directory.

                       Changes in version 0.99.11                       

  - Setting nipalsMCIA to suggests due to nipalsMCIA RMD check failures.

                       Changes in version 0.99.10                       

  - Fixed set.seed() to make network plots consistent within vignette.
  - Fixed issue with impute exposure logic.
  - Updated naming conventions for variable maps.

                       Changes in version 0.99.9                        

  - Added set.seed() to make network plots consistent.
  - Updated vignette formatting and PCA documentation.

                       Changes in version 0.99.8                        

  - Added BiocFileCache-based caching and removed globalenv assignments.
  - Swithced to small example data for vignette and added figure
    captions.
  - Added MultiAssayExperiment to Depends.
  - Standardized MIT license file.
  - Updated pipeline summary output.

                       Changes in version 0.99.5                        

  - Removed .Rproj tracking, .gitignore lines.
  - Updated testing strategy.
  - Modified dependency to 4.5.0.
  - Added vignette chunk labels.

                       Changes in version 0.99.2                        

  - Updated namespace issues with tidybulk.

                       Changes in version 0.99.1                        

  - Updated variable language for consistency.
  - Pre-build objects for vignette run time.
  - Updated circos plot visuals.
  - Updated network functions to create unique node names.

                       Changes in version 0.99.0                        

  - Initial Bioconductor submission.
  - Implements a full exposome-omics pipeline including:
      - Quality control
      - Association analysis
      - Differential abundance analysis
      - Multi-omics integration analysis
      - Functional enrichment analysis
      - Vizualization