Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 2.3.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow to
        perform exploration of and calculations to RNA sequencing data,
        in a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.4.0), ttservice (>= 0.3.6)
Imports: tibble, dplyr (>= 1.1.0), magrittr, tidyr, stringr, rlang,
        purrr, tidyselect, stats, parallel, utils, lifecycle, scales,
        ggplot2, SummarizedExperiment, GenomicRanges, methods,
        S4Vectors, crayon, Matrix
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, widyr,
        clusterProfiler, msigdbr, DESeq2, broom, survival, boot,
        betareg, tidyHeatmap, pasilla, ggrepel, devtools, fastmatch,
        functional, survminer, tidySummarizedExperiment, markdown,
        uwot, matrixStats, preprocessCore, igraph, EGSEA, IRanges,
        here, glmmSeq, pbapply, pbmcapply, lme4, glmmTMB, MASS,
        pkgconfig, enrichplot, patchwork, airway
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:03 UTC
RemoteUrl: https://github.com/bioc/tidybulk
RemoteRef: HEAD
RemoteSha: a7e6f20fe620556b0d27dfd6901981c91d952162
NeedsCompilation: no
Packaged: 2026-07-04 04:42:52 UTC; root
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>