Type: Package
Package: tidySummarizedExperiment
Title: Brings SummarizedExperiment to the Tidyverse
Version: 1.23.2
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")) )
Author: Stefano Mangiola [aut, cre] <mangiolastefano@gmail.com>
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Description: The tidySummarizedExperiment package provides a set of
        tools for creating and manipulating tidy data representations
        of SummarizedExperiment objects. SummarizedExperiment is a
        widely used data structure in bioinformatics for storing
        high-throughput genomic data, such as gene expression or DNA
        sequencing data. The tidySummarizedExperiment package
        introduces a tidy framework for working with
        SummarizedExperiment objects. It allows users to convert their
        data into a tidy format, where each observation is a row and
        each variable is a column. This tidy representation simplifies
        data manipulation, integration with other tidyverse packages,
        and enables seamless integration with the broader ecosystem of
        tidy tools for data analysis.
License: GPL-3
Depends: R (>= 4.3.0), SummarizedExperiment, ttservice (>= 0.5.0)
Imports: tidyprint, dplyr, tibble (>= 3.0.4), magrittr, tidyr, ggplot2,
        rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect,
        ellipsis, vctrs, pillar, stringr, cli, fansi, stats, pkgconfig,
        plyxp, generics
Suggests: AnnotationDbi, BiocStyle, microbenchmark, org.Hs.eg.db,
        testthat, knitr, markdown, rmarkdown, plotly, rbibutils,
        prettydoc, airway
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidySummarizedExperiment
BugReports: https://github.com/stemangiola/tidySummarizedExperiment/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-19 01:14:37 UTC
RemoteUrl: https://github.com/bioc/tidySummarizedExperiment
RemoteRef: HEAD
RemoteSha: cb3f3a8fa4bbe1e0591ef52b43137036dcb4c918
NeedsCompilation: no
Packaged: 2026-11-01 13:16:12 UTC; root