Type: Package
Package: tidySummarizedExperiment
Title: Brings SummarizedExperiment to the Tidyverse
Version: 1.23.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")) )
Author: Stefano Mangiola [aut, cre] <mangiolastefano@gmail.com>
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Description: The tidySummarizedExperiment package provides a set of
        tools for creating and manipulating tidy data representations
        of SummarizedExperiment objects. SummarizedExperiment is a
        widely used data structure in bioinformatics for storing
        high-throughput genomic data, such as gene expression or DNA
        sequencing data. The tidySummarizedExperiment package
        introduces a tidy framework for working with
        SummarizedExperiment objects. It allows users to convert their
        data into a tidy format, where each observation is a row and
        each variable is a column. This tidy representation simplifies
        data manipulation, integration with other tidyverse packages,
        and enables seamless integration with the broader ecosystem of
        tidy tools for data analysis.
License: GPL-3
Depends: R (>= 4.3.0), SummarizedExperiment, ttservice (>= 0.5.0)
Imports: dplyr, tibble (>= 3.0.4), magrittr, tidyr, ggplot2, rlang,
        purrr, lifecycle, methods, utils, S4Vectors, tidyselect,
        ellipsis, vctrs, pillar, stringr, cli, fansi, stats, pkgconfig,
        plyxp
Suggests: BiocStyle, testthat, knitr, markdown, rmarkdown, plotly,
        rbibutils, prettydoc, airway
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidySummarizedExperiment
BugReports: https://github.com/stemangiola/tidySummarizedExperiment/issues
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:20 UTC
RemoteUrl: https://github.com/bioc/tidySummarizedExperiment
RemoteRef: HEAD
RemoteSha: c35aee3b732ada0035392e24518225c4289a35a2
NeedsCompilation: no
Packaged: 2026-07-04 22:44:48 UTC; root