target

Predict Combined Function of Transcription Factors

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013). Extend the algorithm to predict the combined function of two DNA-binding elements from comprable binding and expression data.

Installation

The target package can be installed from Bioconductor using BiocManager.

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("target")

Citation

For citing the package use:

# citing the package
citation("target")