Changes in version 0.99.2                        

New features

  - Removal of the verbose parameter included in each function. This
    functionality has been substituted by a global option that can be
    controlled using controlVerbose()

Bug fixes

  - Implementation of the isTableLike() throughout tTEscanR functions.
  - Removed growing vectors in loops.
  - Removed unnecessary eval = FALSE flags from the vignettes.

Refactoring

  - Deprecated wrapper getOutputName() as it was not being using by the
    current functions in tTEscanR.

                       Changes in version 0.99.1                        

New features

  - Redesign the tTEscanR object as a MultiAssayExperiment().

Bug fixes

  - Updated Authors@R including funding details.
  - Removed the as.character() calls around numeric variables in
    message().
  - Optimized test cases to avoid redundancy.
  - Updated style.css file for the vignettes.

Refactoring

  - Deprecated custom savePlot() wrapper in favor of direct
    ggplot2::ggsave() call.
  - Removed own color palette stored internally to be used in
    getSafeColorScale().
  - Substitute ggradar() by standard ggplot2 functions.

                       Changes in version 0.99.0                        

Initial features

  - Initial submission to Bioconductor.
  - Added core functionality for the computation of translation
    efficiency from sequencing data.
  - Included vignettes and documentation.