Changes in version 1.23.2 o remove stato classes; these were deprecated since 1.5.2 and are no longer used. o ontology is still available via ontology slots. o rols package is deprecated; using internal functions instead. o replaced ontology cache with online/offline mode o added ontology output for model sequences Changes in version 1.21.2 o fix renamed functions in rols Changes in version 1.15.6 o fix broken tests Changes in version 1.15.5 o update automated documentation generation Changes in version 1.15.2 o add ellipsis to model methods Changes in version 1.15.1 o remove duplicates when using param_ids for objects with inherited params o set check.names = FALSE in DatasetExperiment Changes in version 1.7.1 o fix as.code generic o improve as.code for all objects Changes in version 1.5.3 o fix variable_meta assignment Changes in version 1.5.2 o use ontology slots instead of STATO Changes in version 1.1.2 o improved 'show' output for objects o allow ANY for entities Changes in version 1.1.1 o added citations slot to struct classes o added corresponding citations method o added method to get/set seq_in slot o as.SummarizedExepriment now works correctly o using seq_in now works for sequences with more than 2 steps Changes in version 1.0.0 o Biconductor 3.11 release Changes in version 0.99.10 o update vignettes o update documentation o add 'signature' input to struct_obj_method Changes in version 0.99.9 o subsetting of iterators with a single model now converts to a model sequence with 1 step Changes in version 0.99.8 o documentation changes for Bioconductor checks Changes in version 0.99.7 o fixed broken is_valid for .outputs o minor documentation updates Changes in version 0.99.6 o .params and.outputs inherited correctly o fix some documentation issues Changes in version 0.99.5 o added as.DatasetExperiment for converting SummarizedExperiment objects Changes in version 0.99.4 (2020-02-04) o Set initial value for entity on creation if not provided o Rename enum 'list' to 'allowed' Changes in version 0.99.3 (2020-02-03) o Improved use of class constructors Changes in version 0.99.2 o incremental changes in response to bioconductor feedback Changes in version 0.99.1 o incremental changes in response to bioconductor feedback Changes in version 0.99.0 o Bioconductor submission Changes in version 0.4.1 o Final working release before bioconductor submission Changes in version 0.2.0 (2019-07-25) o Introduction of seq_out slot for more flexible workflows (currently method objects only)