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cff-version: 1.2.0
message: 'To cite package "staRgate" in publications use:'
type: software
license: MIT
title: 'staRgate: Automated gating pipeline for flow cytometry analysis to characterize
  the lineage, differentiation, and functional states of T-cells'
version: 1.1.0
doi: 10.32614/CRAN.package.staRgate
identifiers:
- type: url
  value: https://leejasme.github.io/staRgate
abstract: An R-based automated gating pipeline for flow cytometry data designed to
  mimic the manual gating strategy of defining flow biomarker positive populations
  relative to a unimodal background population to include cells with varying intensities
  of marker expression. The pipeline’s main feature is a flexible density-based gating
  strategy capable of capturing varying scenarios based on marker expression patterns
  to analyze a 29-marker flow panel that characterizes T-cell lineage, differentiation,
  and functional states.
authors:
- family-names: Lee
  given-names: Jasme
  email: leej22@mskcc.org
  orcid: https://orcid.org/0009-0006-4492-4872
- family-names: Adamow
  given-names: Matthew
- family-names: Maher
  given-names: Colleen
- family-names: Peng
  given-names: Xiyu
- family-names: Wong
  given-names: Phillip
- family-names: Ehrich
  given-names: Fiona
- family-names: Postow
  given-names: Michael A
- family-names: Callahan
  given-names: Margaret K
- family-names: Shen
  given-names: Ronglai
- family-names: Panageas
  given-names: Katherine S
repository: https://bioc.r-universe.dev
repository-code: https://github.com/leejasme/staRgate
commit: 64cb14695c16827a15d097c41d2dc26a5748626a
url: https://bioconductor.org/packages/staRgate
date-released: '2026-04-28'
contact:
- family-names: Lee
  given-names: Jasme
  email: leej22@mskcc.org
  orcid: https://orcid.org/0009-0006-4492-4872