Package: ssPATHS
Type: Package
Title: ssPATHS: Single Sample PATHway Score
Version: 1.27.0
Author: Natalie R. Davidson
Maintainer: Natalie R. Davidson <natalie.davidson@inf.ethz.ch>
Description: This package generates pathway scores from expression data
        for single samples after training on a reference cohort. The
        score is generated by taking the expression of a gene set
        (pathway) from a reference cohort and performing linear
        discriminant analysis to distinguish samples in the cohort that
        have the pathway augmented and not. The separating hyperplane
        is then used to score new samples.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: ROCR, dml, MESS
Suggests: ggplot2, testthat (>= 2.1.0)
Depends: R (>= 3.5.0), SummarizedExperiment
RoxygenNote: 6.1.1
biocViews: Software, GeneExpression, BiomedicalInformatics, RNASeq,
        Pathways, Transcriptomics, DimensionReduction, Classification
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libuv1-dev
        libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:51:09 UTC
RemoteUrl: https://github.com/bioc/ssPATHS
RemoteRef: HEAD
RemoteSha: f272dd9602314b0a032f7a14716c05d11c2830ea
NeedsCompilation: no
Packaged: 2026-05-30 09:45:49 UTC; root