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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "srnadiff" in publications use:'
type: software
license: GPL-3.0-only
title: 'srnadiff: Finding differentially expressed unannotated genomic regions from
  RNA-seq data'
version: 1.25.0
doi: 10.1371/journal.pone.0256196
abstract: srnadiff is a package that finds differently expressed regions from RNA-seq
  data at base-resolution level without relying on existing annotation. To do so,
  the package implements the identify-then-annotate methodology that builds on the
  idea of combining two pipelines approachs differential expressed regions detection
  and differential expression quantification. It reads BAM files as input, and outputs
  a list differentially regions, together with the adjusted p-values.
authors:
- family-names: Matthias
  given-names: Zytnicki
  email: matthias.zytnicki@inra.fr
- family-names: Ignacio
  given-names: Gonzalez
preferred-citation:
  type: article
  title: Finding differentially expressed sRNA-Seq regions with srnadiff
  authors:
  - family-names: Zytnicki
    given-names: Matthias
  - family-names: González
    given-names: Ignacio
  year: '2021'
  journal: PLOS ONE
  doi: 10.1371/journal.pone.0256196
  volume: '16'
  issue: '8'
  start: e0256196
repository: https://bioc.r-universe.dev
date-released: '2024-03-07'
contact:
- family-names: Matthias
  given-names: Zytnicki
  email: matthias.zytnicki@inra.fr