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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "spicyR" in publications use:'
type: software
title: 'spicyR: Spatial analysis of in situ cytometry data'
version: 1.17.1
doi: 10.1093/bioinformatics/btac268
abstract: 'The spicyR package provides a framework for performing inference on changes
  in spatial relationships between pairs of cell types for cell-resolution spatial
  omics technologies. spicyR consists of three primary steps: (i) summarizing the
  degree of spatial localization between pairs of cell types for each image; (ii)
  modelling the variability in localization summary statistics as a function of cell
  counts and (iii) testing for changes in spatial localizations associated with a
  response variable.'
authors:
- family-names: Canete
  given-names: Nicolas
  email: nicolas.canete@sydney.edu.au
- family-names: Patrick
  given-names: Ellis
  email: ellis.patrick@sydney.edu.au
preferred-citation:
  type: article
  title: 'spicyR: spatial analysis of in situ cytometry data in R'
  authors:
  - family-names: Canete
    given-names: Nicolas
    email: nicolas.canete@sydney.edu.au
  - family-names: Iyengar
    given-names: Sourish
  - family-names: Ormerod
    given-names: John
  - family-names: Baharlou
    given-names: Heeva
  - family-names: Harman
    given-names: Andrew
  - family-names: Patrick
    given-names: Ellis
    email: ellis.patrick@sydney.edu.au
  year: '2022'
  volume: '38'
  issue: '11'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btac268
  url: https://doi.org/10.1093/bioinformatics/btac268
  start: 3099–3105
repository: https://bioc.r-universe.dev
repository-code: https://github.com/SydneyBioX/spicyR
url: https://ellispatrick.github.io/spicyR/
contact:
- family-names: Patrick
  given-names: Ellis
  email: ellis.patrick@sydney.edu.au