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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "speckle" in publications use:'
type: software
license: GPL-3.0-only
title: 'speckle: Statistical methods for analysing single cell RNA-seq data'
version: 1.5.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.speckle
abstract: The speckle package contains functions for the analysis of single cell RNA-seq
  data. The speckle package currently contains functions to analyse differences in
  cell type proportions. There are also functions to estimate the parameters of the
  Beta distribution based on a given counts matrix, and a function to normalise a
  counts matrix to the median library size. There are plotting functions to visualise
  cell type proportions and the mean-variance relationship in cell type proportions
  and counts. As our research into specialised analyses of single cell data continues
  we anticipate that the package will be updated with new functions.
authors:
- family-names: Phipson
  given-names: Belinda
  email: phipson.b@wehi.edu.au
preferred-citation:
  type: article
  title: 'propeller: testing for differences in cell type proportions in single cell
    data'
  authors:
  - family-names: Phipson
    given-names: Belinda
    email: phipson.b@wehi.edu.au
  - family-names: Sim
    given-names: Choon Boon
  - family-names: Porrello
    given-names: Enzo R
  - family-names: Hewitt
    given-names: Alex W
  - family-names: Powell
    given-names: Joseph
  - family-names: Oshlack
    given-names: Alicia
  journal: Bioinformatics
  year: '2022'
  volume: '38'
  issue: '20'
  url: https://doi.org/10.1093/bioinformatics/btac582
  start: '-6'
repository: https://bioc.r-universe.dev
commit: dd5fa17e911cca79fdad2de859375dbf32001a70
date-released: '2020-12-02'
contact:
- family-names: Phipson
  given-names: Belinda
  email: phipson.b@wehi.edu.au