# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "spatzie" in publications use:'
type: software
license: GPL-3.0-only
title: 'spatzie: Identification of enriched motif pairs from chromatin interaction
  data'
version: 1.11.0
doi: 10.1093/nar/gkac036
identifiers:
- type: doi
  value: 10.32614/CRAN.package.spatzie
abstract: Identifies motifs that are significantly co-enriched from enhancer-promoter
  interaction data. While enhancer-promoter annotation is commonly used to define
  groups of interaction anchors, spatzie also supports co-enrichment analysis between
  preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide
  assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially
  enriched motif pairs between two interaction experiments.
authors:
- family-names: Hammelman
  given-names: Jennifer
  email: jhammelm@mit.edu
  orcid: https://orcid.org/0000-0002-1008-2666
- family-names: Krismer
  given-names: Konstantin
  email: krismer@mit.edu
  orcid: https://orcid.org/0000-0001-8994-3416
preferred-citation:
  type: article
  title: 'spatzie: An R package for identifying significant transcription factor motif
    co-enrichment from enhancer-promoter interactions'
  authors:
  - family-names: Hammelman
    given-names: Jennifer
    email: jhammelm@mit.edu
    orcid: https://orcid.org/0000-0002-1008-2666
  - family-names: Krismer
    given-names: Konstanin
  - family-names: Gifford
    given-names: David K.
  journal: Nucleic Acids Research
  year: '2022'
  month: '1'
  doi: 10.1093/nar/gkac036
  url: https://doi.org/10.1093/nar/gkac036
  publisher:
    name: Oxford University Press
  start: gkac036
repository: https://bioc.r-universe.dev
commit: dbb1e32b8b61a5fc9c34d82f331cf66e9c134f4c
url: https://spatzie.mit.edu
contact:
- family-names: Hammelman
  given-names: Jennifer
  email: jhammelm@mit.edu
  orcid: https://orcid.org/0000-0002-1008-2666