Package: spatialLIBD
Title: spatialLIBD: an R/Bioconductor package to visualize
        spatially-resolved transcriptomics data
Version: 1.25.3
Date: 2026-09-28
Authors@R: 
    c(
    person("Leonardo", "Collado-Torres", role = c("aut", "cre"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person(c("Kristen", "R."), "Maynard",
    role = "ctb", email = "Kristen.Maynard@libd.org",
    comment = c(ORCID = "0000-0003-0031-8468")),
    person(c("Andrew", "E."), "Jaffe",
    role = "ctb", email = "andrew.jaffe@libd.org",
    comment = c(ORCID = "0000-0001-6886-1454")),
    person("Brenda", "Pardo",
    role = "ctb", email = "bpardo@lcgej.unam.mx",
    comment = c(ORCID = "0000-0001-8103-7136")),
    person("Abby", "Spangler",
    role = "ctb", email = "aspangle@gmail.com",
    comment = c(ORCID = "0000-0002-0028-9348")),
    person("Jesús", "Vélez Santiago",
    role = "ctb", email = "jvelezmagic@gmail.com",
    comment = c(ORCID = "0000-0001-5128-3838")),
    person("Lukas M.", "Weber",
    role = "ctb", email = "lukas.weber.edu@gmail.com", 
    comment = c(ORCID = "0000-0002-3282-1730")),
    person("Louise", "Huuki-Myers", role = "ctb", email = "lahuuki@gmail.com",
    comment = c(ORCID = "0000-0001-5148-3602")),
    person("Nicholas", "Eagles", role = "ctb", email = "nickeagles77@gmail.com",
    comment = c(ORCID = "0000-0002-9808-5254"))
    )
Description: Inspect interactively the spatially-resolved
        transcriptomics data from the 10x Genomics Visium platform as
        well as data from the Maynard, Collado-Torres et al, Nature
        Neuroscience, 2021 project analyzed by Lieber Institute for
        Brain Development (LIBD) researchers and collaborators.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Imports: shiny, golem, ggplot2, cowplot, plotly, viridisLite,
        shinyWidgets, sessioninfo, grid, grDevices, methods,
        AnnotationHub, utils, png, scater, DT, ExperimentHub,
        SummarizedExperiment, stats, graphics, S4Vectors, IRanges,
        benchmarkme, SingleCellExperiment, BiocFileCache, jsonlite,
        tibble, rtracklayer, Matrix, BiocGenerics, GenomicRanges,
        magick, paletteer, scuttle, edgeR, limma, statmod,
        MatrixGenerics, rlang, dplyr, ComplexHeatmap, circlize,
        scrapper
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
URL: https://github.com/LieberInstitute/spatialLIBD
BugReports: https://support.bioconductor.org/tag/spatialLIBD
Suggests: knitr, RefManageR, rmarkdown, BiocStyle, testthat (>= 2.1.0),
        covr, here, BiocManager, lobstr, DropletUtils, RColorBrewer
VignetteBuilder: knitr
biocViews: Homo_sapiens_Data, ExperimentHub, SequencingData,
        SingleCellData, ExpressionData, Tissue, PackageTypeData,
        SpatialData
Depends: SpatialExperiment (>= 1.3.3), R (>= 4.1)
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libbz2-dev
        libicu-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev perl xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-28 13:27:29 UTC
RemoteUrl: https://github.com/bioc/spatialLIBD
RemoteRef: HEAD
RemoteSha: f63819319aba0a4dbf6ba8f86eb40e61d7cb4c49
NeedsCompilation: no
Packaged: 2026-10-10 10:46:07 UTC; root
Author: Leonardo Collado-Torres [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>),
  Kristen R. Maynard [ctb] (ORCID:
    <https://orcid.org/0000-0003-0031-8468>),
  Andrew E. Jaffe [ctb] (ORCID: <https://orcid.org/0000-0001-6886-1454>),
  Brenda Pardo [ctb] (ORCID: <https://orcid.org/0000-0001-8103-7136>),
  Abby Spangler [ctb] (ORCID: <https://orcid.org/0000-0002-0028-9348>),
  Jesús Vélez Santiago [ctb] (ORCID:
    <https://orcid.org/0000-0001-5128-3838>),
  Lukas M. Weber [ctb] (ORCID: <https://orcid.org/0000-0002-3282-1730>),
  Louise Huuki-Myers [ctb] (ORCID:
    <https://orcid.org/0000-0001-5148-3602>),
  Nicholas Eagles [ctb] (ORCID: <https://orcid.org/0000-0002-9808-5254>)
Maintainer: Leonardo Collado-Torres <lcolladotor@gmail.com>