Package: spatialHeatmap
Type: Package
Title: spatialHeatmap: Visualizing Spatial Assays in Anatomical Images
        and Large-Scale Data Extensions
Version: 2.19.2
Date: 2026-05-12
Authors@R: c(
  person(given="Jianhai", family="Zhang", role=c("aut", "trl", "cre"), email="jzhan067@ucr.edu", comment=""),
  person(given="Le", family="Zhang", role="aut", email="lzhan140@ucr.edu", comment=""),
  person(given="Jordan", family="Hayes", role="aut", email="jhayes@ucr.edu", comment=""),
  person(given="Brendan", family="Gongol", role="aut", email="brendan.gongol@ucr.edu", comment=""),
  person(given="Alexander", family="Borowsky", role="aut", email="aboro002@ucr.edu", comment=""),
  person(given="Julia", family="Bailey-Serres", role="aut", email="julia.bailey@ucr.edu", comment=""),
  person(given="Thomas", family="Girke", role="aut", email="thomas.girke@ucr.edu", comment="")
  )
Description: The spatialHeatmap package offers the primary
        functionality for visualizing cell-, tissue- and organ-specific
        assay data in spatial anatomical images. Additionally, it
        provides extended functionalities for large-scale data mining
        routines and co-visualizing bulk and single-cell data. A
        description of the project is available here:
        https://spatialheatmap.org.
License: Artistic-2.0
Encoding: UTF-8
biocViews: Spatial, Visualization, Microarray, Sequencing,
        GeneExpression, DataRepresentation, Network, Clustering,
        GraphAndNetwork, CellBasedAssays, ATACSeq, DNASeq,
        TissueMicroarray, SingleCell, CellBiology, GeneTarget
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Imports: data.table, dplyr, edgeR, genefilter, ggplot2, grImport, grid,
        gridExtra, igraph, methods, Matrix, rsvg, shiny, grDevices,
        graphics, ggplotify, parallel, reshape2, stats,
        SummarizedExperiment, SingleCellExperiment, shinydashboard,
        S4Vectors, spsComps (>= 0.3.3.0), tibble, utils, xml2
Suggests: AnnotationDbi, av, BiocParallel, BiocFileCache, BiocGenerics,
        BiocStyle, BiocSingular, Biobase, bluster, cachem, DESeq2,
        dendextend, DT, dynamicTreeCut, DelayedArray, flashClust,
        gplots, ggdendro, HDF5Array, htmltools, htmlwidgets, jsonlite,
        kableExtra, knitr, limma, magick, memoise, ExpressionAtlas,
        GEOquery, org.Hs.eg.db, org.Mm.eg.db, org.At.tair.db,
        org.Dr.eg.db, org.Dm.eg.db, pROC, plotly, rmarkdown, rappdirs,
        RUnit, Rtsne, rhdf5, scater, scrapper, shinyWidgets, shinyjs,
        shinyBS, sortable, Seurat, sparkline, spsUtil, uwot, UpSetR,
        visNetwork, WGCNA, xlsx, yaml
BugReports: https://github.com/jianhaizhang/spatialHeatmap/issues
URL: https://spatialheatmap.org,
        https://github.com/jianhaizhang/spatialHeatmap
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        librsvg2-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-13 03:17:40 UTC
RemoteUrl: https://github.com/bioc/spatialHeatmap
RemoteRef: HEAD
RemoteSha: 9b077b1ab08aa63474bcb9ab012fc71963d93df5
NeedsCompilation: no
Packaged: 2026-06-12 10:53:20 UTC; root
Author: Jianhai Zhang [aut, trl, cre],
  Le Zhang [aut],
  Jordan Hayes [aut],
  Brendan Gongol [aut],
  Alexander Borowsky [aut],
  Julia Bailey-Serres [aut],
  Thomas Girke [aut]
Maintainer: Jianhai Zhang <jzhan067@ucr.edu>