NEWS
spatialFDA 0.99.12
- Changed indexing of spatial coordinates to positional index. Names can differ
between objects, e.g. "x" or "coord_x" etc. therefore, positional index
generalises better.
spatialFDA 0.99.11
- major changes in fixing the levels of the mark factors in the point pattern.
Prior to this fix, it could happen that the marks in
selection do not correspond
to the marks in the point pattern and therefore give the inverse result.
spatialFDA 0.99.10
spatialFDA 0.99.9
- remove
imcdatasets dependency and instead download example data directly
from ExperimentHub
- added small reader function
.loadExample to download the data mentioned
above
spatialFDA 0.99.8
- more packages explicitly named
- vignette shows use of PCA based random errors and exchanged one sample
spatialFDA 0.99.7
- explicit package naming for functions to make compatible with linux distributions
- possible to pass
... parameters to fPCA method
spatialFDA 0.99.6
- small error correction in show fPCA method
spatialFDA 0.99.5
- change in how failures in
calcMetricPerFov are handled. Works now as well
if rSeq = NULL
spatialFDA 0.99.4
- variable
ID is no longer created in calcMetricPerFov
- adjusted examples and vignette to the above
- added option to extract gene expression directly in
calcMetricPerFov if
continuous = TRUE
- small bug fix in
calcMetricPerFov to pass ... in all cases
- added variables
legend.position and ncol to plotMetricPerFov
spatialFDA 0.99.3
- adjusted
by variable to work with length 1
- adjusted
... in plotMetricPerFov to be passed only to geom_line
- adjust examples to build in under 10 min
spatialFDA 0.99.2
- Rewrote vignette with smaller dataset
- Implemented quasi likelihood family in vignette to improve variance estimation
- Adjustd calcMetricPerFov.R to be able to calculate cross functions
spatialFDA 0.99.1
- Adressed Bioconductor review
- Added unit tests
- Added functional boxplots
- Added diagnostic plots to vignette
spatialFDA 0.99.0
- Initial Bioconductor submission.