Package: spatialDE
Title: R wrapper for SpatialDE
Version: 1.19.0
Authors@R: c(
    person("Davide", "Corso", role = "aut",
           email = "davidecrs92@gmail.com",
           comment = c(ORCID = "0000-0001-8845-3693")),
    person("Milan", "Malfait", role = "aut",
           email = "milan.malfait94@gmail.com",
           comment = c(ORCID = "0000-0001-9144-3701")),
    person("Lambda", "Moses", role = "aut",
           email = "dlu2@caltech.edu",
           comment = c(ORCID = "0000-0002-7092-9427")),
    person("Gabriele", "Sales", role = "cre",
            email = "gabriele.sales@unipd.it"))
Description: SpatialDE is a method to find spatially variable genes
        (SVG) from spatial transcriptomics data. This package provides
        wrappers to use the Python SpatialDE library in R, using
        reticulate and basilisk.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/sales-lab/spatialDE,
        https://bioconductor.org/packages/spatialDE/
BugReports: https://github.com/sales-lab/spatialDE/issues
Depends: R (>= 4.3)
Imports: reticulate, basilisk (>= 1.9.10), checkmate, stats,
        SpatialExperiment, methods, SummarizedExperiment, Matrix,
        ggplot2, ggrepel, scales, gridExtra
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: Software, Transcriptomics
StagedInstall: no
Config/testthat/edition: 3
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libpng-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:56:44 UTC
RemoteUrl: https://github.com/bioc/spatialDE
RemoteRef: HEAD
RemoteSha: 59649f3313fb3bebb649e4507456f8d4db21207d
NeedsCompilation: no
Packaged: 2026-06-11 07:08:08 UTC; root
Author: Davide Corso [aut] (ORCID: <https://orcid.org/0000-0001-8845-3693>),
  Milan Malfait [aut] (ORCID: <https://orcid.org/0000-0001-9144-3701>),
  Lambda Moses [aut] (ORCID: <https://orcid.org/0000-0002-7092-9427>),
  Gabriele Sales [cre]
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>