NEWS
spARI 0.99.17 (2025-09-27)
spARI 0.99.16 (2025-09-06)
- Updated
vignettes/spARI.Rmd.
spARI 0.99.15 (2025-09-04)
spARI 0.99.14 (2025-09-04)
- Added the
FNN package to the Suggests field in the DESCRIPTION file.
spARI 0.99.13 (2025-09-04)
- Updated
vignettes/spARI.Rmd.
spARI 0.99.12 (2025-09-01)
spARI 0.99.11 (2025-08-30)
- Removed
parallel from the Imports field in the DESCRIPTION file.
spARI 0.99.10 (2025-08-30)
- Deleted system file
.Rapp.history
spARI 0.99.9 (2025-08-30)
spARI 0.99.8 (2025-08-30)
- Updated the README file
- Updated the descriptions of parameters and examples in R functions
spARI and perm_test
- Updated the code
sum_f_vals_total = sum(f_func(dist_mat_Lvec)) to sum_f_vals_total = sum(f_func(dist_mat_Lvec[dist_mat_Lvec != 0]))
- Added
set.seed() to the example of perm_test when use_parallel = FALSE
- Replaced all occurrences of
= used for assignment (except in function arguments) with <-
spARI 0.99.7 (2025-08-07)
- Converted
spARI_example_data into a list object
spARI 0.99.6 (2025-08-07)
spARI 0.99.5 (2025-08-07)
- Addressed code styling suggestions (replaced
1:n by seq_len(), replaced sapply by vapply)
- Removed usage of
set.seed() in package code
- Added missing
\value{} sections in man pages
spARI 0.99.4 (2025-08-07)
- Removed
.DS_Store files in the package
spARI 0.99.3 (2025-08-07)
spARI 0.99.2 (2025-08-07)
- Subscribed to the Bioc-devel mailing list
spARI 0.99.1 (2025-07-23)
- Generated spARI_example_data.rda in the directory
data/ and finished man documenation on the data object
- Removed
exportPattern("^[[:alpha:]]+") and export explicitly
- Removed
vignette/spARI.html
- Expanded support for
SpatialExperiment objects; added spe argument to spARI and perm_test functions
- Made
spARI compatible with character labels by mapping r_labels and c_labels to numeric factors
- Added specific case handling in
perm_test for singleton clusters
- Changed p-value calculation from
>= to > in perm_test, aligning with the paper
spARI 0.99.0 (2025-07-15)
- Submitted to Bioconductor