Package: snapcount
Type: Package
Title: R/Bioconductor Package for interfacing with Snaptron for rapid
        querying of expression counts
Version: 1.25.0
Authors@R: 
    c(person(given = "Rone",
             family = "Charles",
             role = c("aut", "cre"),
             email = "rcharle8@jh.edu"))
Description: snapcount is a client interface to the Snaptron
        webservices which support querying by gene name or genomic
        region. Results include raw expression counts derived from
        alignment of RNA-seq samples and/or various summarized measures
        of expression across one or more regions/genes per-sample (e.g.
        percent spliced in).
Depends: R (>= 4.0.0)
Imports: R6, httr, rlang, purrr, jsonlite, assertthat, data.table,
        Matrix, magrittr, methods, stringr, stats, IRanges,
        GenomicRanges, SummarizedExperiment
Suggests: BiocManager, bit64, covr, knitcitations, knitr (>= 1.6),
        devtools, BiocStyle (>= 2.5.19), rmarkdown (>= 0.9.5), testthat
        (>= 2.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
Roxygen: list(markdown = TRUE, roclets = c("rd", "namespace",
        "collate"))
URL: https://github.com/langmead-lab/snapcount
BugReports: https://github.com/langmead-lab/snapcount/issues
biocViews: Coverage, GeneExpression, RNASeq, Sequencing, Software,
        DataImport
VignetteBuilder: knitr
ByteCompile: true
Config/pak/sysreqs: libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:45 UTC
RemoteUrl: https://github.com/bioc/snapcount
RemoteRef: HEAD
RemoteSha: ad069496bd2178520a51a0678b6bd09b89067859
NeedsCompilation: no
Packaged: 2026-07-03 21:08:01 UTC; root
Author: Rone Charles [aut, cre]
Maintainer: Rone Charles <rcharle8@jh.edu>