Package: smoothclust
Version: 1.9.3
Title: smoothclust
Description: Method for identification of spatial domains and
        spatially-aware clustering in spatial transcriptomics data. The
        method generates spatial domains with smooth boundaries by
        smoothing gene expression profiles across neighboring spatial
        locations, followed by unsupervised clustering. Spatial domains
        consisting of consistent mixtures of cell types may then be
        further investigated by applying cell type compositional
        analyses or differential analyses.
Authors@R: c(
    person("Lukas M.", "Weber", 
           email = "weberlm3@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-3282-1730")))
URL: https://github.com/lmweber/smoothclust
BugReports: https://github.com/lmweber/smoothclust/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Clustering
Depends: R (>= 4.4.0)
Imports: SpatialExperiment, SummarizedExperiment, BiocNeighbors,
        Matrix, methods, utils
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, STexampleData, scuttle, scran, scater,
        ggspavis, testthat
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-14 15:47:30 UTC
RemoteUrl: https://github.com/bioc/smoothclust
RemoteRef: HEAD
RemoteSha: d7b8dc0cc76be153dc2346b38eab78f7f5e94d6b
NeedsCompilation: no
Packaged: 2026-07-14 21:43:57 UTC; root
Author: Lukas M. Weber [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3282-1730>)
Maintainer: Lukas M. Weber <weberlm3@gmail.com>