Package: smoothclust
Version: 1.9.6
Title: smoothclust
Description: Tools for spatial domain analysis in spatial
        transcriptomics data. Includes spatial smoothing of gene
        expression profiles for downstream clustering and a boundary
        density (BD) metric for summarizing spatial domain
        organization. The smoothing function returns processed
        expression values for subsequent clustering. BD requires only
        spatial coordinates and categorical labels, and provides local
        and sample-level summaries of label transitions.
Authors@R: c(
    person("Lukas M.", "Weber", 
           email = "weberlm3@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-3282-1730")))
URL: https://github.com/lmweber/smoothclust
BugReports: https://github.com/lmweber/smoothclust/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Clustering
Depends: R (>= 4.4.0)
Imports: SpatialExperiment, SummarizedExperiment, S4Vectors,
        BiocNeighbors, Matrix, methods, utils
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, STexampleData, scran, scater, ggspavis,
        testthat
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-13 04:16:02 UTC
RemoteUrl: https://github.com/bioc/smoothclust
RemoteRef: HEAD
RemoteSha: b06dd0c5d2b69529596ea81521a0d54a21b3a336
NeedsCompilation: no
Packaged: 2026-10-19 23:58:20 UTC; root
Author: Lukas M. Weber [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3282-1730>)
Maintainer: Lukas M. Weber <weberlm3@gmail.com>