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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "smokingMouse" in publications use:'
type: software
license: Artistic-2.0
title: 'smokingMouse: Provides access to smokingMouse project data'
version: 1.11.0
doi: 10.18129/B9.bioc.smokingMouse
identifiers:
- type: doi
  value: 10.32614/CRAN.package.smokingMouse
abstract: This is an ExperimentHub package that provides access to the data generated
  and analyzed in the [smoking-nicotine-mouse](https://github.com/LieberInstitute/smoking-nicotine-mouse/)
  LIBD project. The datasets contain the expression data of mouse genes, transcripts,
  exons, and exon-exon junctions across 208 samples from pup and adult mouse brain,
  and adult blood, that were exposed to nicotine, cigarette smoke, or controls. They
  also contain relevant metadata of these samples and gene expression features, such
  QC metrics, if they were used after filtering steps and also if the features were
  differently expressed in the different experiments.
authors:
- family-names: Gonzalez-Padilla
  given-names: Daianna
  email: glezdaianna@gmail.com
  orcid: https://orcid.org/0009-0005-8348-3195
preferred-citation:
  type: manual
  title: Provides access to smokingMouse project data
  authors:
  - family-names: Gonzalez-Padilla
    given-names: Daianna
    email: glezdaianna@gmail.com
    orcid: https://orcid.org/0009-0005-8348-3195
  - family-names: Collado-Torres
    given-names: Leonardo
  year: '2026'
  url: http://www.bioconductor.org/packages/smokingMouse
  notes: https://github.com/LieberInstitute/smokingMouse/smokingMouse - R package
    version 1.11.0
  doi: 10.18129/B9.bioc.smokingMouse
repository: https://bioc.r-universe.dev
repository-code: https://github.com/LieberInstitute/smokingMouse
commit: 9a01d424e222f80b5741ec7d5b71ac47f5267897
url: https://support.bioconductor.org/tag/smokingMouse
date-released: '2024-12-10'
contact:
- family-names: Gonzalez-Padilla
  given-names: Daianna
  email: glezdaianna@gmail.com
  orcid: https://orcid.org/0009-0005-8348-3195
references:
- type: article
  title: Molecular impact of nicotine and smoking exposure on the developing and adult
    mouse brain
  authors:
  - family-names: Gonzalez-Padilla
    given-names: Daianna
  - family-names: Eagles
    given-names: Nicholas J.
  - family-names: Cano
    given-names: Marisol
  - family-names: Pertea
    given-names: Geo
  - family-names: Jaffe
    given-names: Andrew E.
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Hancock
    given-names: Dana B.
  - family-names: Handa
    given-names: James T.
  - family-names: Martinowich
    given-names: Keri
  - family-names: Collado-Torres
    given-names: Leonardo
  year: '2024'
  journal: bioRxiv
  doi: 10.1101/2024.11.05.622149
  url: https://doi.org/10.1101/2024.11.05.622149