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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "slingshot" in publications use:'
type: software
license: Artistic-2.0
title: 'slingshot: Tools for ordering single-cell sequencing'
version: 2.13.0
abstract: Provides functions for inferring continuous, branching lineage structures
  in low-dimensional data. Slingshot was designed to model developmental trajectories
  in single-cell RNA sequencing data and serve as a component in an analysis pipeline
  after dimensionality reduction and clustering. It is flexible enough to handle arbitrarily
  many branching events and allows for the incorporation of prior knowledge through
  supervised graph construction.
authors:
- family-names: Street
  given-names: Kelly
  email: street.kelly@gmail.com
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com
- family-names: Das
  given-names: Diya
  email: diyadas@berkeley.edu
preferred-citation:
  type: article
  title: 'Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics'
  authors:
  - family-names: Street
    given-names: Kelly
    email: street.kelly@gmail.com
  - family-names: Risso
    given-names: Davide
    email: risso.davide@gmail.com
  - family-names: Fletcher
    given-names: Russell B.
  - family-names: Das
    given-names: Diya
    email: diyadas@berkeley.edu
  - family-names: Ngai
    given-names: John
  - family-names: Yosef
    given-names: Nir
  - family-names: Purdom
    given-names: Elizabeth
  - family-names: Dudoit
    given-names: Sandrine
  year: '2018'
  journal: BMC Genomics
  url: https://doi.org/10.1186/s12864-018-4772-0
  start: '477'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kstreet13/slingshot
url: https://github.com/kstreet13/slingshot
contact:
- family-names: Street
  given-names: Kelly
  email: street.kelly@gmail.com